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The Fourth Asia Pacific Bioinformatics Conference
13-16 Feb, 2006, Taiwan
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Accepted papers

No. Paper ID Paper Title Authors
01 #113 ACCURACY OF FOUR HEURISTICS FOR THE FULL SIBSHIP RECONSTRUCTION PROBLEM IN THE PRESENCE OF GENOTYPE ERROR Dmitry Konovalov
02 #125 INFERENCE OF GENE REGULATORY NETWORKS FROM MICROARRAY DATA: A FUZZY LOGIC APPROACH Ma Chi Hung, Chan Chun Chung
03 #127 SYSTEM IDENTIFICATION AND ROBUSTNESS ANALYSIS OF THE CIRCADIAN REGULATORY NETWORK VIA MICROARRAY DATA IN ARABIDOPSIS THALIANA Bor-Sen Chen
04 #138 Protein Subcellular Localization Prediction with WoLF PSORT horton paul, Keun-Joon Park, Takeshi Obayashi, Kenta Nakai
05 #145 Predicting Ranked SCOP Domains by Mining Associations of Visual Contents in Distance Matrices PIN-HAO CHI, CHI-REN SHYU
06 #146 RECOMP: A Parsimony-based Method for Detecting Recombination Derek Ruths, Luay Nakhleh
07 #150 AlignScope : A Visual Mining Tool for Gene Team Finding with Whole Genome Alignment Hee-Jeong Jin, Hye-Jung Kim, Jeong-Hyeon Choi, Hwan-Gue Cho
08 #153 AN EFFICIENT ALGORITHM FOR STRING MOTIF DISCOVERY Francis Chin, Henry Leung
09 #154 Discriminative Detection of Cis-Acting Regulatory Variation from Location Data Yuji Kawada, Yasubumi Sakakibara
10 #155 On the Complexity of Finding Control Strategies for Boolean Networks Tatsuya Akutsu, Morihiro Hayashida, Wai-Ki Ching, Michael Ng
11 #162 Characterization of Multi-Charge Mass Spectra for Peptide Sequencing Ket Fah Chong, Kang Ning, Hon Wai Leong
12 #165 EDAM An Efficient Clique Discovery Algorithm with Frequency Transformation for Finding Motifs Guoren Wang, Yifei Ma
13 #168 A Recursive Method for Solving Haplotype Frequencies in Multiple Loci Linkage Analysis Michael Ng
14 #178 TRENDS IN CODON AND AMINO ACID USAGE IN HUMAN PATHOGEN Tropheryma whipplei, THE ONLY KNOWN ACTINOBACTERIA WITH REDUCED GENOME Sabyasachi Das, Sandip Paul, Chitra Dutta
15 #182 CONSEQUENCES OF MUTATION, SELECTION AND PHYSICO-CHEMICAL PROPERTIES OF ENCODED PROTEINS ON SYNONYMOUS CODON USAGE IN ADENOVIRUSES Sandip Paul, Sabyasachi Das, Chitra Dutta
16 #188 Microarray Missing Value Imputation by Iterated Local Least Squares Zhipeng Cai, Maysam Heydari, Guohui Lin
17 #189 PROPERTY-DEPENDENT ANALYSIS OF ALIGNED PROTEINS FROM TWO OR MORE POPULATIONS Steinar Thorvaldsen, Elinor Ytterstad, Tor Fla
18 #192 A generalized output-coding scheme with SVM for multiclass microarray classification Li Shen, Eng Chong Tan
19 #197 TECHNIQUES FOR ASSESSING PHYLOGENETIC BRANCH SUPPORT: A Derek Ruths, Luay Nakhleh
20 #204 ANALYZING INCONSISTENCY TOWARD ENHANCING INTEGRATION OF BIOLOGICAL MOLECULAR DATABASES Phoebe Chen, Qingfeng Chen
21 #207 A novel approach for structured consensus motif inference under specificity and quorum constraints Christine Sinoquet
22 #209 A Randomized Algorithm for Learning Mahalanobis Metrics: Application to Classification and Regression of Biological Data Christopher Langmead
23 #213 Disentangling the Role of Tetranucleotide in the Sequence-Dependence of DNA Conformation: A Molecular Dynamics Approach Marcos J. Arauzo-Bravo, Satoshi Fujii, Hidetoshi Kono, Akinori Sarai
24 #215 A NEW NEURAL NETWORK FOR BETA-TURN PREDICTION: THE EFFECT OF SITE-SPECIFIC AMINO ACID PREFERENCE Zhong-ru Xie, Ming-jing Hwang
25 #216 Identification of Over-represented Combinations of Transcription Factor Binding Sites in Sets of Co-expressed Genes Shao-shan Huang, Debra Fulton, David Arenillas, Paul Perco, Shannan Ho Sui, James Mortimer, Wyeth Wasserman
26 #217 A Knowledge-Based Approach to Protein Local Structure Prediction Ching-Tai Chen, Hsin-Nan Lin, Kuen-Pin Wu, Ting-Yi Sung, Wen-Lian Hsu
27 #230 SVM-based Identification of microRNA precursors Liang Huai Yang, Wynne Hsu, Mong Li Lee, Limsoon Wong
28 #231 GENOME-WIDE COMPUTATIONAL ANALYSIS OF SMALL NUCLEAR RNA GENES OF ORYZA SATIVA (INDICA AND JAPONICA) MM.Shashikanth, A.Snehalatharani, SK. Mubarak, K.Ulaganathan
29 #235 RESOVING GENE TREE AND SPECIES TREE PROBLEM BY PHYLOGENETIC MINING Xiaoxu Han
30 #236 Characterization of the existence of galled-tree networks Jan Manuch, Xiaohong Zhao, Ladislav Stacho, Arvind Gupta
31 #237 Semi-Supervised Threshold Queries on Pharmacogenomics Time Sequences Matthias Renz, Johannes Assfalg, Hans-Peter Kriegel, Peer Kroeger, Peter
32 #238 Structure based chemical shift prediction using Random Forests non-linear regression Christopher Langmead, K Arun
33 #246 ONBIRES: ONtology-based BIological Relation Extraction System Minlie Huang, Xiaoyan Zhu, Shilin Ding, Hao Yu, Ming Li
34 #248 A More Accurate and Efficient Whole Genome Phylogeny P.Y. Chan, T.W. Lam, Siu-Ming Yiu
35 #249 Gene Expression Data Clustering Based on Local Similarity Combination De Pan, Fei Wang, Jiankui Guo

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