| No. |
Paper ID |
Paper Title |
Authors |
| 01 |
#113 |
ACCURACY OF FOUR HEURISTICS FOR THE FULL
SIBSHIP RECONSTRUCTION PROBLEM IN THE PRESENCE OF GENOTYPE ERROR |
Dmitry Konovalov |
| 02 |
#125 |
INFERENCE OF GENE REGULATORY NETWORKS FROM
MICROARRAY DATA: A FUZZY LOGIC APPROACH |
Ma Chi Hung, Chan Chun Chung |
| 03 |
#127 |
SYSTEM IDENTIFICATION AND ROBUSTNESS
ANALYSIS OF THE CIRCADIAN REGULATORY NETWORK VIA MICROARRAY DATA IN
ARABIDOPSIS THALIANA |
Bor-Sen Chen |
| 04 |
#138 |
Protein Subcellular Localization
Prediction with WoLF PSORT |
horton paul, Keun-Joon Park, Takeshi
Obayashi, Kenta Nakai |
| 05 |
#145 |
Predicting Ranked SCOP Domains by Mining
Associations of Visual Contents in Distance Matrices |
PIN-HAO CHI, CHI-REN SHYU |
| 06 |
#146 |
RECOMP: A Parsimony-based Method for
Detecting Recombination |
Derek Ruths, Luay Nakhleh |
| 07 |
#150 |
AlignScope : A Visual Mining Tool for Gene
Team Finding with Whole Genome Alignment |
Hee-Jeong Jin, Hye-Jung Kim, Jeong-Hyeon
Choi, Hwan-Gue Cho |
| 08 |
#153 |
AN EFFICIENT ALGORITHM FOR STRING MOTIF
DISCOVERY |
Francis Chin, Henry Leung |
| 09 |
#154 |
Discriminative Detection of Cis-Acting
Regulatory Variation from Location Data |
Yuji Kawada, Yasubumi Sakakibara
|
| 10 |
#155 |
On the Complexity of Finding Control
Strategies for Boolean Networks |
Tatsuya Akutsu, Morihiro Hayashida, Wai-Ki
Ching, Michael Ng |
| 11 |
#162 |
Characterization of Multi-Charge Mass
Spectra for Peptide Sequencing |
Ket Fah Chong, Kang Ning, Hon Wai Leong |
| 12 |
#165 |
EDAM An Efficient Clique Discovery
Algorithm with Frequency Transformation for Finding Motifs
|
Guoren Wang, Yifei Ma |
| 13 |
#168 |
A Recursive Method for Solving Haplotype
Frequencies in Multiple Loci Linkage Analysis |
Michael Ng |
| 14 |
#178 |
TRENDS IN CODON AND AMINO ACID USAGE IN
HUMAN PATHOGEN Tropheryma whipplei, THE ONLY KNOWN ACTINOBACTERIA
WITH REDUCED GENOME |
Sabyasachi Das, Sandip Paul, Chitra Dutta |
| 15 |
#182 |
CONSEQUENCES OF MUTATION, SELECTION AND
PHYSICO-CHEMICAL PROPERTIES OF ENCODED PROTEINS ON SYNONYMOUS CODON
USAGE IN ADENOVIRUSES |
Sandip Paul, Sabyasachi Das, Chitra Dutta
|
| 16 |
#188 |
Microarray Missing Value Imputation by
Iterated Local Least Squares |
Zhipeng Cai, Maysam Heydari, Guohui Lin
|
| 17 |
#189 |
PROPERTY-DEPENDENT ANALYSIS OF ALIGNED
PROTEINS FROM TWO OR MORE POPULATIONS |
Steinar Thorvaldsen, Elinor Ytterstad, Tor
Fla |
| 18 |
#192 |
A generalized output-coding scheme with
SVM for multiclass microarray classification |
Li Shen, Eng Chong Tan |
| 19 |
#197 |
TECHNIQUES FOR ASSESSING PHYLOGENETIC
BRANCH SUPPORT: A |
Derek Ruths, Luay Nakhleh |
| 20 |
#204 |
ANALYZING INCONSISTENCY TOWARD ENHANCING
INTEGRATION OF BIOLOGICAL MOLECULAR DATABASES |
Phoebe Chen, Qingfeng Chen |
| 21 |
#207 |
A novel approach for structured consensus
motif inference under specificity and quorum constraints |
Christine Sinoquet |
| 22 |
#209 |
A Randomized Algorithm for Learning
Mahalanobis Metrics: Application to Classification and Regression of
Biological Data |
Christopher Langmead |
| 23 |
#213 |
Disentangling the Role of Tetranucleotide
in the Sequence-Dependence of DNA Conformation: A Molecular Dynamics
Approach |
Marcos J. Arauzo-Bravo, Satoshi Fujii,
Hidetoshi Kono, Akinori Sarai |
| 24 |
#215 |
A NEW NEURAL NETWORK FOR BETA-TURN
PREDICTION: THE EFFECT OF SITE-SPECIFIC AMINO ACID PREFERENCE |
Zhong-ru Xie, Ming-jing Hwang |
| 25 |
#216 |
Identification of Over-represented
Combinations of Transcription Factor Binding Sites in Sets of
Co-expressed Genes |
Shao-shan Huang, Debra Fulton, David
Arenillas, Paul Perco, Shannan Ho Sui, James Mortimer, Wyeth
Wasserman |
| 26 |
#217 |
A Knowledge-Based Approach to Protein
Local Structure Prediction |
Ching-Tai Chen, Hsin-Nan Lin, Kuen-Pin Wu,
Ting-Yi Sung, Wen-Lian Hsu |
| 27 |
#230 |
SVM-based Identification of microRNA
precursors |
Liang Huai Yang, Wynne Hsu, Mong Li Lee,
Limsoon Wong |
| 28 |
#231 |
GENOME-WIDE COMPUTATIONAL ANALYSIS OF
SMALL NUCLEAR RNA GENES OF ORYZA SATIVA (INDICA AND JAPONICA) |
MM.Shashikanth, A.Snehalatharani, SK.
Mubarak, K.Ulaganathan |
| 29 |
#235 |
RESOVING GENE TREE AND SPECIES TREE
PROBLEM BY PHYLOGENETIC MINING |
Xiaoxu Han |
| 30 |
#236 |
Characterization of the existence of
galled-tree networks |
Jan Manuch, Xiaohong Zhao, Ladislav Stacho,
Arvind Gupta |
| 31 |
#237 |
Semi-Supervised Threshold Queries on
Pharmacogenomics Time Sequences |
Matthias Renz, Johannes Assfalg,
Hans-Peter Kriegel, Peer Kroeger, Peter |
| 32 |
#238 |
Structure based chemical shift prediction
using Random Forests non-linear regression |
Christopher Langmead, K Arun |
| 33 |
#246 |
ONBIRES: ONtology-based BIological
Relation Extraction System |
Minlie Huang, Xiaoyan Zhu, Shilin Ding,
Hao Yu, Ming Li |
| 34 |
#248 |
A More Accurate and Efficient Whole Genome
Phylogeny |
P.Y. Chan, T.W. Lam, Siu-Ming Yiu |
| 35 |
#249 |
Gene Expression Data Clustering Based on
Local Similarity Combination |
De Pan, Fei Wang, Jiankui Guo |
