Program
download apbc2006_program.pdf
Sunday, 12
February 2006
11:30-13:30 AASBi Board meeting
14:00-17:00
AASBi symposium
14.30–20.30 APBC Registration
Main entry of the activity
center
18.30–20.30
APBC & AASBi
Reception The
Plato Hall
Monday, 13
February 2006
8.30–16.30 Registration
Main entry of the activity
center
9.00–9.15 Opening
Session The
Alexander Hall
9.15–10.00 Keynote
1 The Alexander
Hall (chair: Tao
Jiang,Univ of California - Riverside)
Whole Genome
Optical Mapping. Prof. Michael Waterman
(Univ of Southern California)
10.00–10.30 Tea Break
Lobby
10.30–11.30 Algorithm
The Alexander Hall
(chair: Michael Waterman,
Univ of Southern California)
1.
Property-dependent Analysis of Aligned Proteins from Two or More
Populations, Steinar Thorvaldsen, Elinor Ytterstad, Tor Fla
2.
Alignscope : A
Visual Mining Tool for Gene Team Finding with Whole Genome Alignment,
Hee-Jeong Jin, Hye-Jung Kim, Jeong-Hyeon Choi, Hwan-Gue Cho
3.
A Randomized
Algorithm for Learning Mahalanobis Metrics: Application to
Classification and Regression of Biological Data, Christopher
Langmead
11.30–13.00 Lunch Break (The Alexander Hall) & Poster Session
1 (The Locke Hall)
13.00 –
14.00 Structure classification and prediction
The Alexander Hall
(chair: Chris Langmead,
Carnegie Mellon Univ)
1.
Predicting
Ranked SCOP Domains by Mining Associations of Visual Contents in
Distance Matrices, Pin-Hao Chi, Chi-Ren Shyu
2.
A New Neural
Network for Beta-turn Prediction: The Effect of Site-specific Amino Acid
Preference, Zhong-ru Xie, Ming-jing Hwang
3.
A
Knowledge-Based Approach to Protein Local Structure Prediction, Ching-Tai
Chen, Hsin-Nan Lin, Kuen-Pin Wu, Ting-Yi Sung, Wen-Lian Hsu
14.00–15.00 Microarray data analysis
The Alexander Hall
(chair: Ping-Chiang Lyu,
Nat’l Tsing-Hua Univ)
1.
Microarray
Missing Value Imputation by Iterated Local Least Squares, Zhipeng Cai,
Maysam Heydari, Guohui Lin
2.
A generalized
output-coding scheme with SVM for multiclass microarray classification,
Li Shen, Eng Chong Tan
3.
Gene
Expression Data Clustering Based on Local Similarity Combination,
De Pan, Fei Wang, Jiankui
Guo
15.00–16.00 Tea Break (Lobby) & Poster Session 1 (The
Locke Hall)
16.00–17.00 Genome rearrangement
The Alexander Hall
(chair: Kun-Mao
Chao,Nat’l Taiwan Univ)
1.
RECOMP: A
Parsimony-based Method for Detecting Recombination, Derek Ruths, Luay
Nakhleh
2.
Accuracy of
four heuristics for the full sibship reconstruction problem in the
presence of genotype error, Dmitry Konovalov
3.
A Recursive
Method for Solving Haplotype Frequencies in Multiple Loci Linkage
Analysis, Michael Ng
19.00–21.00 Conference Banquet
Tuesday, 14
February 2006
8.30–16.30 Registration
Lobby (information desk)
9.15–10.00 Keynote
2 The Alexander
Hall (chair:
Phoebe Chen, Deakin Univ)
Automating the
Search for Lateral Gene Transfer. Prof. Mark Ragan (Univ. of
Queensland)
10.00–10.30 Tea Break
Lobby
10.30–11.30 Phylogenetics
The Alexander Hall
(chair: Mark Ragan,
Univ. of Queensland)
1.
Resoving gene
tree and species tree problem by phylogenetic mining, Xiaoxu Han
2.
Techniques for
assessing phylogenetic branch support, Derek Ruths, Luay Nakhleh
3.
A More
Accurate and Efficient Whole Genome Phylogeny, P.Y. Chan, T.W. Lam,
Siu-Ming Yiu
11.30–13.00 Lunch Break (The Alexander Hall) & Poster Session
2 (The Locke Hall)
13.00–14.00 Gene variation and mutation
The Alexander Hall
(chair: Hsueh-Feng Juan,
Nat’l TaiwanUniv)
1.
Discriminative
Detection of Cis-Acting Regulatory Variation from Location Data, Yuji
Kawada, Yasubumi Sakakibara
2.
Trends in
codon and amino acid usage in human pathogen Tropheryma whipplei, the
only known actinobacteria with reduced genome,
Sabyasachi Das, Sandip
Paul, Chitra Dutta
3.
Consequences
of mutation, selection and physico-chemical properties of encoded
proteins on synonymous codon usage in adenoviruses,
Sandip Paul, Sabyasachi
Das, Chitra Dutta
14.00–14.40 Database
The Alexander Hall
(chair: Wen-Lian Hsu,
Academia Sinica)
1.
Analyzing
inconsistency toward enhancing integration of biological molecular
databases, Phoebe Chen, Qingfeng Chen
2.
ONBIRES:
ONtology-based BIological Relation Extraction System, Minlie Huang,
Xiaoyan Zhu, Shilin Ding, Hao Yu, Ming Li
14.40–15.40 Tea Break (Lobby) & Poster Session 2 (The
Locke Hall)
15.40–16.40 Structure analysis
The Alexander Hall
(chair:Ming-Jing Hwang,
Academia Sinica)
1.
Disentangling
the Role of Tetranucleotide in the Sequence-Dependence of DNA
Conformation: A Molecular Dynamics Approach,
Marcos J. Arauzo-Bravo,
Satoshi Fujii, Hidetoshi Kono, Akinori Sarai
2.
Characterization of Multi-Charge Mass Spectra for Peptide Sequencing,
Ket Fah Chong, Kang Ning, Hon Wai Leong
3.
Structure
Based Chemical Shift Prediction Using Random Forests Non-Linear
Regression,
Christopher Langmead, K Arun
16.40–17.15
Invited Talk
The Alexander Hall
(chair: Limsoon Wong,
Institute for Infocomm Research)
Advances in transcriptome
analysis. Shoba Ranganathan
(McQuarrie Univ)
Wednesday, 15
February 2006
8.30–16.30 Registration
Lobby (information desk)
9.15–10.00 Keynote
3 The Alexander
Hall (chair: Ueng-Cheng
Yang,Nat’l Yang-Ming Univ)
On the Inference
of Regulatory Elements, Circuits and Modules. Wen-Hsiung Li
(Academia Sinica &
U. of Chicago)
10.00–10.30 Tea Break
Lobby
10.30–11.30 Systems biology and gene network (I)
The Alexander Hall
(chair:Hoong-Chien Lee,
Nat’l
Central Univ )
1.
Inference of
gene regulatory networks from microarray data: a fuzzy logic approach,
Ma Chi Hung, Chan Chun Chung
2.
System
identification and robustness analysis of the circadian regulatory
network via microarray data in arabidopsis thaliana,
Bor-Sen Chen
3.
On the
Complexity of Finding Control Strategies for Boolean Networks,
Tatsuya Akutsu, Morihiro Hayashida, Wai-Ki Ching, Michael Ng
11.30–13.00 Lunch Break (The Alexander Hall) & Poster Session
3 (The Locke Hall)
13.00–14.00 Systems biology and gene network (II)
The Alexander Hall
(chair: Christian
Schoenbach, RIKEN )
1.
Identification
of Over-represented Combinations of Transcription Factor Binding Sites
in Sets of Co-expressed Genes, Shao-shan Huang, Debra Fulton, David
Arenillas, Paul Perco, Shannan Ho Sui, James Mortimer, Wyeth Wasserman
2.
Characterization of the existence of galled-tree networks, Jan Manuch,
Xiaohong Zhao, Ladislav Stacho, Arvind Gupta
3.
Semi-Supervised Threshold Queries on Pharmacogenomics Time Sequences,
Johannes Assfalg,
Hans-Peter Kriegel, Peer Kroeger, Peter Kunath, A. Pryakhin, & Matthias
Renz,
14.00–15.00 Motif analysis
The Alexander Hall
(chair: Francis Chin,
Hong-Kong Univ)
1.
An efficient
algorithm for string motif discovery, Francis Chin, Henry Leung
2.
EDAM An
Efficient Clique Discovery Algorithm with Frequency Transformation for
Finding Motifs, Guoren Wang, Yifei Ma
3.
A novel
approach for structured consensus motif inference under specificity and
quorum constraints, Christine Sinoquet
15.00–16.00 Tea Break (Lobby) & Poster Session 3 (The
Locke Hall)
16.00–17.00 Analysis of biological molecules
The Alexander Hall
(chair: Shoba Ranganathan
McQuarrie Univ)
1.
SVM-based
Identification of microRNA precursors, Liang Huai Yang, Wynne Hsu,
Mong Li Lee, Limsoon Wong
2.
Genome-wide
computational analysis of small nuclear RNA genes of Oryza sativa
(Indica and Japonica), M.Shashikanth, A.Snehalatharani, Sk. Mubarak,
K.Ulaganathan
3.
Protein
Subcellular Localization Prediction with wolf PSORT, Horton Paul,
Keun-Joon Park, Takeshi Obayashi, Kenta Nakai
17.00–17.15 Closing Session
The Alexander Hall
Closing
Remarks by General Co-chair, Dr. Wen-Hsiung Li (Academia Sinica
& U. of Chicago)
Closing Remarks
by PC Co-chair, Dr. Ueng-Cheng Yang (National Yang-Ming Univ)
Thursday, 16
February 2006
8.30–17.30 Registration
Classroom I & II (map will be
available on the information desk)
9.00–12.00 Classroom I at NTU
Biostatistical and Bioinformatics Approaches in High Dimensional
Data Derived from High Throughput Assays: A Consumer Guide
Prof. Yu Shyr（Vanderbilt
University, USA）
9.00–12.00 Classroom II at NTU
Systems biology
Prof. Hsuan-Cheng Huang（NationalYang-Ming
University, Taiwan, R.O.C.）
13.30–16.30 Classroom I at NTU
Matrix visualization and information mining
Dr. Han-Ming Wu & Prof. Chun-Houh Chen（Institute
of Statistical Science, Academia Sinica, Taiwan, R.O.C.）
13.30–16.30 Classroom II at NTU
Gene Ontology Browsing Utility
Dr. Wen-Dar Lin & Prof. Jan-Ming Ho（Institute
of Information Science, Academia Sinica, Taiwan, R.O.C.）
Poster session
Posters should be posted before 9:00, presented during
the afternoon tea break, and taken off before 17:15.
Session 1 (No. 1-28): Feb. 13
Session 2 (No. 29-56): Feb. 14
Session 3 (No. 57-80): Feb. 15
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