生物資訊學及功能性基因體學研習會

Bioinformatics and Functional Genomics Workshop: Family Classification Approach

10月24日前報名,安排上機實習學員及一般課程學員名單,已於10月24日以電子郵件寄出。尚未收到通知學員,請與我們聯絡。

線上報名已於10月27日中午截止,但仍開放現場報名,歡迎參加。

REGISTRATION: 

線上免費報名 http://140.129.75.230:8081/

DATE

20001030-31

Place

上課地點:陽明大學活動中心表演廳 (位置地圖)

實習地點:陽明大學第一教學大樓,一樓,第一及第二電腦教學教室(位置地圖)

Program

Oct. 30 2000   10月30日

  8:00 - 8:20       Registration註冊報到

  8:20 - 8:30       Opening remark開幕式

  8:30 - 10:00     Introduction: Bioinformatics on Genome Project (Dr. Cathy Wu吳慧華博士) 生物資訊用於基因體計畫之簡介

l          Functional and Structural Genomics - Comparative Genomics, Gene Expression

l          Proteomics - Protein Expression, Metabolic Pathway

l          Gene/Protein Family - Ortholog, Paralog, Interolog, Phylogenetic Profile, Superfamily, Domain, Motif

10:00 - 10:15    Break中場休息

10:15 - 12:30                                           Sequence Search and Classification Tools (Dr. Cathy Wu) 序列搜尋及分類的工具

l          Sequence Database Search and Alignment - BLAST, FASTA, Dynamic Programming

l          Family Classification and Phylogeny - Patterns, Profiles, HMMs, Neural Networks, Clustal

l          Integrated Search and Classification System - GeneFIND Case Study

12:30 - 13:45    Lunch 午餐

                                       13:45 - 17:00    Demo & Practice (Dr. Cathy Wu) 生物資訊工具使用示範及上機實習

Labs: Protein Classification and Annotation蛋白質的分類及註解

                                     (1) Analysis of Hypothetical Proteins

                                         (2) Evaluation of Complex Superfamily-Domain-Function Relationships

Sequence Search and Classification Tools序列搜尋及分類的工具

l          Sequence Database Search and Alignment - BLAST, FASTA, SSEARCH

l          Family Classification - Patterns, Profiles, HMMs

l          Integrated Search and Classification System - PIR Advanced Search and GeneFIND

l          Discussion

 

Oct. 31 2000   10月31日

                                       8:30 - 10:30   Molecular and Classification Databases (Dr. Cathy Wu) 分子及分類資料庫

l          Major Molecular Databases - Gene, Genome, Taxonomy, Literature

l          Classification Databases - Protein Family, Function/Pathway, Structure, Proteome

l          Integrated Classification Database - ProClass Case Study

10:30 - 10:45    Break 中場休

                                       10:45 - 12:15    Bioinformatics Infrastructure and Issues (Dr. Cathy Wu) 生物資訊的基礎架構及議題

l          Integrated Database and Search System

l          Database Interoperability - Ontology, XML

l          Relational/Object-Relational Database

12:15 - 13:30    Lunch 午餐

                                       13:30 - 16:30    Demo & Practice (Dr. Cathy Wu) 生物資訊工具使用示範及上機實習

                                                                  Molecular and Classification Databases分子及分類資料庫

l          Protein Sequence Database - PIR-International Protein Sequence Database

l          Integrated Classification Database - iProClass

l          Oracle Object-Relational Database - Design and Query

l          Discussion

16:30 - 16:40    Closing remark 閉幕式

 

SPONSORS

 
Genome-based Biomedical Research (National Yang-Ming University Genome Research Center)

MIST (Medical Informatics Symposium in Taiwan)

CONTACT

Miss Huang (in Yang's lab)
Tel:  02-28267000 ext. 5666, 5667
Fax: 02-28264843
 

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聯絡電話: 呂小姐(02-28267322)

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