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EMBOSS: pasteseq |
% pasteseq ese.seq tst.seq estste.seq -pos=67
This is probably slightly more readable if the argument names are used instead of relying on the parameter positions:
% pasteseq -seq=ese.seq -ins=tst.seq -out=estste.seq -pos=67
To insert the sequence 'tst.seq' before the start of sequence 'ese.seq' use -pos=0 :
% pasteseq -seq=ese.seq -ins=tst.seq -out=estste.seq -pos=0
Mandatory qualifiers:
[-sequence] sequence Sequence USA
[-insseq] sequence Sequence to insert
[-outseq] seqout Output sequence USA
-pos integer The position in the main input sequence to
insert after.
To insert before the start use the position
0.
Optional qualifiers: (none)
Advanced qualifiers: (none)
General qualifiers:
-help bool report command line options. More
information on associated and general
qualifiers can be found with -help -verbose
|
| Mandatory qualifiers | Allowed values | Default | |
|---|---|---|---|
| [-sequence] (Parameter 1) |
Sequence USA | Readable sequence | Required |
| [-insseq] (Parameter 2) |
Sequence to insert | Readable sequence | Required |
| [-outseq] (Parameter 3) |
Output sequence USA | Writeable sequence | <sequence>.format |
| -pos | The position in the main input sequence to insert after. To insert before the start use the position 0. | Integer 0 or more | $(sequence.end) |
| Optional qualifiers | Allowed values | Default | |
| (none) | |||
| Advanced qualifiers | Allowed values | Default | |
| (none) | |||
| cutseq | Removes a specified section from a sequence |
| degapseq | Removes gap characters from sequences |
| descseq | Alter the name or description of a sequence |
| entret | Reads and writes (returns) flatfile entries |
| extractseq | Extract regions from a sequence |
| infoseq | Displays some simple information about sequences |
| listor | Writes a list file of the logical OR of two sets of sequences |
| maskfeat | Mask off features of a sequence |
| maskseq | Mask off regions of a sequence |
| newseq | Type in a short new sequence |
| noreturn | Removes carriage return from ASCII files |
| notseq | Excludes a set of sequences and writes out the remaining ones |
| nthseq | Writes one sequence from a multiple set of sequences |
| revseq | Reverse and complement a sequence |
| seqret | Reads and writes (returns) sequences |
| seqretall | Reads and writes (returns) a set of sequences one at a time |
| seqretset | Reads and writes (returns) a set of sequences all at once |
| seqretsplit | Reads and writes (returns) sequences in individual files |
| splitter | Split a sequence into (overlapping) smaller sequences |
| swissparse | Retrieves sequences from swissprot using keyword search |
| trimest | Trim poly-A tails off EST sequences |
| trimseq | Trim ambiguous bits off the ends of sequences |
| vectorstrip | Strips out DNA between a pair of vector sequences |