國家高速電腦中心八十七年度生物資訊學

高級課程(基因體分析)授課進度表

的:

Hands-on experience of genome analysis

法:

Each group will be assigned to annotate part of a complete microbial genome using the techniques taught in basic and medium level courses. Instructor and teaching assistants will help you to solve the technical problems, but you have to think about the bio-logical significance. You should be able to get a deeper understanding of the applicability of programs, parameter settings, and data interpretation after intensive thinking, drill, and discussion. At the end of this course, each group will present their results; an integrated view of the microbial physiology will be deduced and discussed.

授課系級:

Principal investigators and postdoctors from 18 different labs (Each person can bring at most one student with you to help you or to learn with you.). Supporting teams at NHRI, Academia Sinica, etc.

授課內容:

日期與時間

時數

教師姓名(中文)

2/17

2:10 – 3:00

Functional genomics

1

 

3:10 – 5:00

Workshop (I): Discovery of putative genes

2

 

7:00 – 9:00

GCG review and automation

2

 

2/18

8:10 – 10:00

Statistical significance of Blast and FastA results

2

 

10:10 – 12:00

Workshop (II): Discovery of putative genes - cont.

2

 

1:10 – 3:00

NCBI tools

2

 

3:15 – 5:05

Discussion

2

 

7:00 – 9:00

Gene finding

2

 

2/19

8:10 – 10:00

Workshop (III): Identification of genes

2

 

10:10 – 12:00

Gene family and protein family

2

 

1:10 – 3:00

Workshop (IV): Identification of genes - cont.

2

 

3:15 – 5:05

Discussion

2

 

7:00 – 9:00

Discoverying motifs

2

 

2/20

8:10 – 10:00

Workshop (V): Identification of sites

2

 

10:10 – 12:00

Identifying sites in unaligned sequences

2

 

1:10 – 3:00

Preparation of presentation

2

 

3:15 – 5:05

Discussion - Integration

2