Workshop (I)

You now have the basic idea about how to do genome annotation. Besides, Lee has tell you how to automate the job submission process to simplify your work. Please get a sequence from the table below and do the genomic sequence analysis in the next few days.

Hints: To start your analysis, you may want to

  1. Install POST
  2. Try to use VectorNTI demo to find out the position of orf's in your sequence. List the ranges to your POST
  3. Use Map to predict the location of any orf's larger than 50 a.a. in your sequence.
  4. Send the above outfile x.map (x=gr. #) to FTP to. We will convert it to HTML for you, so you will be able to browse this file later with a browser. Look for x_map.htm file under your group subdir. to find this file.
  5. Get tl.batch and tblastn.batch files pub
  6. Modify the above two files and submit the orf for tblastn analysis as background job

Sequence assignment:

Please get the assigned sequence pub

Group Sequence Comments
1 1 @
2 2 @
3 3 @
4 4 @
5 5 @
6 6 @
7 7 @
8 8 @
9 9 @
10 10 @
11 11 @
12 12 @
13 13 @
14 14 @
15 15 @
16 16 @
17 17 @
18 18 @
19 19 @
20 20 @

@

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