Workshop (IV): Sites
Based on Fickettes's framework, the existence of patterns such
as TATA box may indicate functional sites. If a functional site
appear at a right place, it will make your assignment more
significant. Now you have learned how to predict the promoters
and termination sites. Please re-examine your assignment to see
whether they are consistent with the functional sites.
Please predict the promoters in your sequence (please
refer to related material of
the termination sites in your sequence (a sample
output is in test.trm and testrev.trm).
Get your results back to PC and save it under local_dir
Run macro ? in POST to
re-organize your data. They will be stored in sheets
"Promoter", "Terminator", and
Try to plot the sites on the "GeneMark"
figure (generated in Workshop
(II)) and exmine whether it make sense.
Make your comments in sheet "ORF_file" of
the related orf's.
Promoter (column J)
Terminator (column K)
Ribosome binding sites (column L)
Signals (Column M)
Send POST to FTP to