|
Number of sequences |
Number of sequences containing AS information |
CDS |
68,409 (100%) |
7,324 (10.7%) |
EST |
3,735,344 (100%) |
94,734 (2.5%) |
¡@ |
Number of sequences |
Number of sequences containing AS information |
CDS |
38,216 (100%) |
1,945 (5.1%) |
EST |
2,068,128 (100%) |
28,866 (1.4%) |
Classification of genes |
# UniGene clusters |
||
Genes without ASSP |
9,983 (50.1%) |
||
Genes with ASSPs |
Only mRNA-supported AS |
684 (3.4%) |
9,953 (49.5%) |
Only Single EST supported AS |
4,025 (20.2%) |
||
Multiple ESTs supported AS |
5,244 (26.3%) |
||
Total |
19,936 (100%) |
||
Classification of genes |
# UniGene clusters |
||
Genes without ASSP |
11,396 (68.6%) |
||
Genes with ASSPs |
Only mRNA-confirmed AS |
524 (3.1%) |
5,219 (31.4%) |
Only Single EST supported AS |
2,720 (16.4%) |
||
Multiple ESTs supported AS |
1,975 (11.9%) |
||
Total |
16,615 (100%) |
||
| The number of ESTs supporting an ASSP | ASSPs Count in human |
ASSPs Count in mosue |
| 1 EST | 16643 | 6605 |
| 2~3 ESTs | 5434 | 1829 |
| 4~7 ESTs | 1997 | 468 |
| 8~15 ESTs | 840 | 181 |
| 16~31 ESTs | 392 | 74 |
| 32~63 ESTs | 165 | 30 |
| 64~127 ESTs | 71 | 11 |
| 128~255 ESTs | 22 | 9 |
| 256~511 ESTs | 7 | 4 |
| 512~1023 ESTs | 5 | 3 |
| 1024~2047 ESTs | 1 | 0 |
| sum | 25577 | 9214 |
| Ug_id | Gene | # UniGene member | # putative ASSPs | Descriptions | Cytoband |
|---|---|---|---|---|---|
| Hs.2186 | EEF1G | 6743 | 33 | eukaryotic translation elongation factor 1 gamma | 7 |
| Hs.14376 | ACTG1 | 9120 | 38 | actin, gamma 1 | 17q25 |
| Hs.21346 | LOC58481 | 469 | 20 | hypothetical protein LOC58481 | Xq28 |
| Hs.22129 | DJ1042K10.2 | 202 | 21 | hypothetical protein | 22q13.1-q13.2 |
| Hs.75990 | HP | 550 | 45 | haptoglobin | |
| Hs.77385 | MYL6 | 2095 | 20 | myosin, light polypeptide 6, alkali, smooth muscle and non-muscle | 12 |
| Hs.78601 | UROD | 439 | 23 | uroporphyrinogen decarboxylase | 1p34 |
| Hs.82208 | ACADVL | 645 | 20 | acyl-Coenzyme A dehydrogenase, very long chain | |
| Hs.84298 | CD74 | 3475 | 23 | CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) | 5q32 |
| Hs.166011 | CTNND1 | 510 | 23 | catenin (cadherin-associated protein), delta 1 | 11q11 |
| Hs.169476 | GAPD | 11286 | 44 | glyceraldehyde-3-phosphate dehydrogenase | 12p13 |
| Hs.178551 | RPL8 | 2138 | 24 | ribosomal protein L8 | 8q |
| Hs.179661 | FKBP1A | 4800 | 37 | FK506-binding protein 1A (12kD) | 20p13 |
| Hs.181165 | EEF1A1 | 24710 | 67 | eukaryotic translation elongation factor 1 alpha 1 | |
| Hs.182426 | RPS2 | 9350 | 24 | ribosomal protein S2 | |
| Hs.182447 | HNRPC | 1804 | 24 | heterogeneous nuclear ribonucleoprotein C (C1/C2) | 2q32 |
| Hs.184411 | ALB | 6401 | 35 | albumin | 4q11-q13 |
| Hs.195464 | FLNA | 1333 | 20 | filamin A, alpha (actin-binding protein-280) | Xq28 |
| Hs.198281 | PKM2 | 3781 | 24 | pyruvate kinase, muscle | 15q22 |
| Hs.252259 | RPS3 | 3919 | 20 | ribosomal protein S3 | 11q13.3-q13.5 |
| Hs.274348 | BAT3 | 481 | 20 | HLA-B associated transcript 3 | 6p21.3 |
| Hs.278242 | MGC12992 | 5930 | 25 | hypothetical protein MGC12992 | 9 |
| Hs.287820 | FN1 | 3430 | 21 | fibronectin 1 | 2q34 |
| Hs.334822 | H19 | 4384 | 36 | H19, imprinted maternally expressed untranslated mRNA | 11p15.5 |
| Mm.331 | 2700054O04Rik | 763 | 23 | RIKEN cDNA 2700054O04 gene | |
| Mm.4063 | Ndr1 | 647 | 35 | N-myc downstream regulated 1 | |
| Mm.7156 | Gpx3 | 1932 | 27 | glutathione peroxidase 3 | 11 B3-B5 |
| Mm.16773 | Alb1 | 3427 | 90 | serum albumin variant | 5 50.0 cM |
| Mm.21983 | Bhmt | 308 | 22 | betaine-homocysteine methyltransferase | |
| Mm.25789 | Csna | 2190 | 22 | casein alpha | 5 44.9 cM |
| Mm.197554 | Ahsg | 795 | 36 | alpha-2-HS-glycoprotein |