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Statistics R5

Contents

Ratio of Sequences containing AS information

UniGene Human Build #153 and dbEST 2002/08/22

    

Number of sequences

Number of sequences containing AS information

CDS

84,003 (100%)

12,261 (14.6%)

EST

4,550,451 (100%)

145,309 (3.2%)

UniGene Mouse Build #112 and dbEST 2002/08/22

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Number of sequences

Number of sequences containing AS information

CDS

46,745 (100%)

2,762 (6.0%)

EST

2,633,205 (100%)

34,052 (1.3%)

Number of Genes Containing ASSPs (Alternative Splicing Site Pairs)

Human (UniGene Human Build #153 and dbEST 2002/08/22

Classification of genes

# UniGene clusters

Genes without ASSP

12,883 (49.5%) 

Genes with ASSPs

Only mRNA-supported AS
(no EST supported)

1004 (3.9%)

13,145 (50.5%)

Only Single EST supported AS

4,770 (18.3%)

Multiple ESTs supported AS

7,371 (28.3%)

Total

26,028(100%)

Mouse (UniGene Mouse Build #112 and dbEST 2002/08/22)

Classification of genes

# UniGene clusters

Genes without ASSP

10,536 (59.4%)

Genes with ASSPs

Only mRNA-confirmed AS
(no EST supported)

 563 (3.2%)

7,187 (40.6%)

Only Single EST supported AS

3,574 (20.2%)

Multiple ESTs supported AS

3,050 (17.2%)

Total

17,723 (100%)

ASSPs Supported by Different Number of EST Sequences

The number of ESTs supporting an ASSP

ASSPs Count in human

ASSPs Count in mosue
1 EST 23941 10130
2~3 ESTs 7996 2909
4~7 ESTs 3161 848
8~15 ESTs 1347 372
16~31 ESTs 641 139
32~63 ESTs 397 66
64~127 ESTs 195 20
128~255 ESTs 72 13
256~511 ESTs 17 6
512~1023 ESTs 9 4
1024~2047 ESTs 7 1
2048~4095 ESTs 12 0
4096~8191 ESTs 4 0
sum

37,799

14,508

Genes with more than 20 ASSPs

Ug_id Gene UniGene member AS lists(pic) Text_Info All seq info Descriptions Cytoband
Hs.5662 GNB2L1 6147 20 text pic guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 5q35.3
Hs.21497 LOC89941 272 20 text pic hypothetical protein BC014942 16p13.12
Hs.75884 DKFZP586A011 305 20 text pic cervical cancer 1 protooncogene 12q11
Hs.84298 CD74 4131 20 text pic CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) 5q32
Hs.172004 TTN 935 20 text pic titin 2q24.3
Hs.172609 NUCB1 675 20 text pic nucleobindin 1 19q13.2-q13.4
Hs.173736 AUP1 490 20 text pic ancient ubiquitous protein 1 2p13
Hs.182248 SQSTM1 2558 20 text pic sequestosome 1 5q35
Hs.198267 MUC4 162 20 text pic mucin 4, tracheobronchial 3q29
Hs.239298 MAP4 790 20 text pic microtubule-associated protein 4 3p21
Hs.77326 IGFBP3 1013 21 text pic insulin-like growth factor binding protein 3 7p13-p12
Hs.77393 FDPS 998 21 text pic farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase) 1q21.2
Hs.177516 HDLBP 1706 21 text pic high density lipoprotein binding protein (vigilin) 2q37
Hs.289088 HSPCA 3899 21 text pic heat shock 90kD protein 1, alpha 14q32.33
Hs.372421 GLTSCR2 1485 21 text pic glioma tumor suppressor candidate region gene 2 19q13.3
Hs.286 RPL4 5694 22 text pic ribosomal protein L4 15q22
Hs.23476 CIZ1 540 22 text pic Cip1-interacting zinc finger protein 9q34.1
Hs.74335 HSPCB 4523 22 text pic heat shock 90kD protein 1, beta 6p12
Hs.75069 SHMT2 1216 22 text pic serine hydroxymethyltransferase 2 (mitochondrial) 12q12-q14
Hs.178551 RPL8 3023 37 text pic ribosomal protein L8 8q24.3
Hs.198281 PKM2 5481 37 text pic pyruvate kinase, muscle 15q22
Hs.78575 PSAP 2785 22 text pic prosaposin (variant Gaucher disease and variant metachromatic leukodystrophy) 10q21-q22
Hs.79672 KIAA0652 428 22 text pic KIAA0652 gene product 11
Hs.110613 KIAA0220 835 22 text pic KIAA0220 protein 16p12.1
Hs.193163 BIN1 403 22 text pic bridging integrator 1 2q14
Hs.182426 RPS2 9506 34 text pic ribosomal protein S2 16p13.3
Hs.184411 ALB 6326 35 text pic albumin 4q11-q13
Hs.251653 TUBB2 2010 22 text pic tubulin, beta, 2
Hs.159161 ARHGDIA 1297 23 text pic Rho GDP dissociation inhibitor (GDI) alpha 17q25.3
Hs.274348 BAT3 668 23 text pic HLA-B associated transcript 3 6p21.3
Hs.75309 EEF2 1283 24 text pic eukaryotic translation elongation factor 2 19pter-q12
Hs.78601 UROD 521 24 text pic uroporphyrinogen decarboxylase 1p34
Hs.79748 SLC3A2 900 24 text pic solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 11q13
Hs.179661 DKFZp434N0650 5352 41 text pic hypothetical protein DKFZp434N0650 21q22.3
Hs.14376 ACTG1 12003 44 text pic actin, gamma 1 17q25
Hs.169476 GAPD 13689 59 text pic glyceraldehyde-3-phosphate dehydrogenase 12p13
Hs.181165 EEF1A1 26996 90 text pic eukaryotic translation elongation factor 1 alpha 1 6q14.1
Hs.249495 HNRPA1 3506 24 text pic heterogeneous nuclear ribonucleoprotein A1 12q13.1
Hs.334822 H19 2468 24 text pic H19, imprinted maternally expressed untranslated mRNA 11p15.5
Hs.6449 FLJ20542 374 25 text pic hypothetical protein FLJ20542 1p36.33
Hs.22129 DJ1042K10.2 259 25 text pic hypothetical protein DJ1042K10.2 22q13.1-q13.2
Hs.166011 CTNND1 619 25 text pic catenin (cadherin-associated protein), delta 1 11q11
Hs.75990 HP 536 32 text pic haptoglobin 16q22.1
Hs.195464 FLNA 1523 28 text pic filamin A, alpha (actin binding protein 280) Xq28
Hs.170027 MDM2 100 29 text pic Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) 12q14.3-q15
Hs.252259 RPS3 4732 30 text pic ribosomal protein S3 11q13.3-q13.5
Hs.287820 FN1 4032 30 text pic fibronectin 1 2q34
Hs.334842 K-ALPHA-1 7265 30 text pic tubulin, alpha, ubiquitous 12q12-12q14.3
Hs.82208 ACADVL 859 32 text pic acyl-Coenzyme A dehydrogenase, very long chain 17p13-p11
Hs.2186 EEF1G 8402 31 text pic eukaryotic translation elongation factor 1 gamma 11q13.2
Hs.254105 ENO1 6587 27 text pic enolase 1, (alpha) 1p36.3-p36.2
Hs.103561 SRp25 348 26 text pic SRp25 nuclear protein 12q24.31
Hs.323463 FLJ20719 628 26 text pic hypothetical protein FLJ20719 1p31
Mm.27818 Eef2 4149 26 text pic eukaryotic translation elongation factor 2
Mm.7156 Gpx3 1979 27 text pic glutathione peroxidase 3 11 B3-B5
Mm.196614 Eef1a1 9794 27 text pic eukaryotic translation elongation factor 1 alpha 1 19
Mm.21983 Bhmt 358 22 text pic betaine-homocysteine methyltransferase 18
Mm.197551 Hspa8 4899 22 text pic heat shock 70kD protein 8 9 24.0 cM
Mm.235 Ubb 2529 31 text pic ubiquitin B 11 35.0 cM
Mm.218862 MGC36398 1175 33 text pic hypothetical protein MGC36398 4
Mm.4063 Ndr1 726 36 text pic N-myc downstream regulated 1
Mm.197554 Ahsg 876 36 text pic alpha-2-HS-glycoprotein 16 15.0 cM
Mm.331 Ubc 1376 39 text pic ubiquitin C 5 64.0 cM
Mm.13705 Rrbp1 248 20 text pic ribosome binding protein 1 2
Mm.34374 2200008D09Rik 3048 20 text pic RIKEN cDNA 2200008D09 gene
Mm.16773 Alb1 3730 90 text pic albumin 1 5 50.0 cM
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