[UP]

Statistics R6

Contents

Ratio of Sequences containing AS information

UniGene Human Build #158 and dbEST 2003/02/18

    

Number of sequences

Number of sequences containing AS information

CDS

115,648 (100%)

15,704 (13.6%)

EST

5,024,739 (100%)

156,428 (3.1%)

UniGene Mouse Build #119 and dbEST 2003/02/18

¡@

Number of sequences

Number of sequences containing AS information

CDS

50,797 (100%)

3,276 (6.4%)

EST

3,691,858 (100%)

63,659 (1.7%)

Number of Genes Containing ASSPs (Alternative Splicing Site Pairs)

Human (UniGene Human Build #158 and dbEST 2003/02/18)

Classification of genes

# UniGene clusters

Genes without ASSP

18,879 (57.0%) 

Genes with ASSPs

Only mRNA-supported AS
(no EST supported)

1,628 (4.9%)

14,232 (43.0%)

Only Single EST supported AS

4,571 (13.8%)

Multiple ESTs supported AS

8,033 (24.3%)

Total

33,111(100%)

Mouse (UniGene Mouse Build #119 and dbEST 2003/02/18)

Classification of genes

# UniGene clusters

Genes without ASSP

10,148 (53.6%)

Genes with ASSPs

Only mRNA-confirmed AS
(no EST supported)

 442 (2.3%)

8,794 (46.4%)

Only Single EST supported AS

3,900 (20.6%)

Multiple ESTs supported AS

4,452 (23.5%)

Total

18,942 (100%)

ASSPs Supported by Different Number of EST Sequences

The number of ESTs supporting an ASSP

ASSPs Count in human

ASSPs Count in mosue
1 EST 25,567 14,095
2~3 ESTs 8,653 4,444
4~7 ESTs 3,411 1,576
8~15 ESTs 1,520 654
16~31 ESTs 725 312
32~63 ESTs 454 119
64~127 ESTs 207 54
128~255 ESTs 77 27
256~511 ESTs 27 8
512~1023 ESTs 11 5
1024~2047 ESTs 8 0
2048~4095 ESTs 5 0
4096~8191 ESTs 3 0
sum

 40,668

21,294

Genes with more than 20 ASSPs

Ug_id Gene UniGene member AS lists(pic) Text_Info All seq info Descriptions Cytoband
Hs.5022 IPW 119 20 text pic imprinted in Prader-Willi syndrome 15q11-q12
Hs.5094 RNF10 735 20 text pic ring finger protein 10 12q24.31
Hs.10326 COPE 927 20 text pic coatomer protein complex, subunit epsilon 19p13.11
Hs.21497 MIRO-2 293 20 text pic mitochondrial Rho 2 16p13.3
Hs.78223 APEH 610 20 text pic N-acylaminoacyl-peptide hydrolase 3p21.31
Hs.119475 CIRBP 1016 20 text pic cold inducible RNA binding protein 19p13.3
Hs.172609 NUCB1 769 20 text pic nucleobindin 1 19q13.2-q13.4
Hs.173736 AUP1 524 20 text pic ancient ubiquitous protein 1 2p13
Hs.198267 MUC4 256 20 text pic mucin 4, tracheobronchial 3q29
Hs.273415 ALDOA 4960 20 text pic aldolase A, fructose-bisphosphate 16q22-q24
Hs.406511 RPLP0 9287 20 text pic ribosomal protein, large, P0 12q24.2
Hs.821 BGN 720 21 text pic biglycan Xq28
Hs.5662 GNB2L1 7069 21 text pic guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 5q35.3
Hs.29797 RPL10 5155 21 text pic ribosomal protein L10 Xq28
Hs.75106 CLU 3762 21 text pic clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J) 8p21-p12
Hs.79672 KIAA0652 444 21 text pic KIAA0652 gene product 11p11.12
Hs.83849 FLII 730 21 text pic flightless I homolog (Drosophila) 17p11.2
Hs.241395 PRSS1 1421 21 text pic protease, serine, 1 (trypsin 1) 7q34
Hs.251653 TUBB2 2081 21 text pic tubulin, beta, 2
Hs.279946 MARS 791 21 text pic methionine-tRNA synthetase 12q13.2
Hs.286035 MYO15B 154 21 text pic myosin XVB, pseudogene 17q25.2
Hs.335918 FDPS 1070 21 text pic farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase) 1q21.3
Hs.406532 RPN2 1085 21 text pic ribophorin II 20q12-q13.1
Hs.77326 IGFBP3 1120 22 text pic insulin-like growth factor binding protein 3 7p13-p12
Hs.129959 IL-17RC 253 22 text pic interleukin 17 receptor C 3p25.3
Hs.180414 HSPA8 4746 22 text pic heat shock 70kDa protein 8 11q24.1
Hs.181357 LAMR1 5404 22 text pic laminin receptor 1 (ribosomal protein SA, 67kDa) 3p21.3
Hs.239298 MAP4 891 22 text pic microtubule-associated protein 4 3p21
Hs.279518 APLP2 1829 22 text pic amyloid beta (A4) precursor-like protein 2 11q24
Hs.356531 HSPCA 7530 22 text pic heat shock 90kDa protein 1, alpha 14q32.33
Hs.388862 RPL13 4283 22 text pic ribosomal protein L13 16q24.3
Hs.5245 FLJ20643 505 23 text pic hypothetical protein FLJ20643 19q13.33
Hs.78601 UROD 625 23 text pic uroporphyrinogen decarboxylase 1p34
Hs.79748 SLC3A2 1012 23 text pic solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2 11q13
Hs.182248 SQSTM1 2770 23 text pic sequestosome 1 5q35
Hs.193163 BIN1 432 23 text pic bridging integrator 1 2q14
Hs.194660 CLN3 317 23 text pic ceroid-lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) 16p12.1
Hs.250655 PTMA 2972 23 text pic prothymosin, alpha (gene sequence 28) 2q35-q36
Hs.274348 BAT3 757 23 text pic HLA-B associated transcript 3 6p21.3
Hs.374518 FTH1 7310 23 text pic ferritin, heavy polypeptide 1 11q13
Hs.22129 DJ1042K10.2 283 24 text pic hypothetical protein DJ1042K10.2 22q13.1-q13.2
Hs.74335 HSPCB 5397 24 text pic heat shock 90kDa protein 1, beta 6p12
Hs.75069 SHMT2 1230 24 text pic serine hydroxymethyltransferase 2 (mitochondrial) 12q12-q14
Hs.103561 ARL6IP4 360 24 text pic ADP-ribosylation-like factor 6 interacting protein 4 12q24.31
Hs.155218 E1B-AP5 997 24 text pic E1B-55kDa-associated protein 5 19q13.13
Hs.159161 ARHGDIA 1333 24 text pic Rho GDP dissociation inhibitor (GDI) alpha 17q25.3
Hs.23476 CIZ1 610 26 text pic Cip1-interacting zinc finger protein 9q34.1
Hs.297753 VIM 4273 26 text pic vimentin 10p13
Hs.376844 HNRPA1 3844 26 text pic heterogeneous nuclear ribonucleoprotein A1 12q13.1
Hs.286 RPL4 5853 27 text pic ribosomal protein L4 15q22
Hs.9295 ELN 185 27 text pic elastin (supravalvular aortic stenosis, Williams-Beuren syndrome) 7q11.23
Hs.75309 EEF2 1373 27 text pic eukaryotic translation elongation factor 2 19pter-q12
Hs.84298 CD74 4613 27 text pic CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) 5q32
Hs.166011 CTNND1 612 27 text pic catenin (cadherin-associated protein), delta 1 11q11
Hs.372421 GLTSCR2 1684 27 text pic glioma tumor suppressor candidate region gene 2 19q13.3
Hs.153261 IGHM 7044 29 text pic immunoglobulin heavy constant mu 14q32.33
Hs.177516 HDLBP 2228 29 text pic high density lipoprotein binding protein (vigilin) 2q37
Hs.323463 FLJ20719 1005 29 text pic hypothetical protein FLJ20719 1p31
Hs.6449 FLJ20542 354 30 text pic hypothetical protein FLJ20542 1p36.33
Hs.254105 ENO1 7016 30 text pic enolase 1, (alpha) 1p36.3-p36.2
Hs.170027 MDM2 109 31 text pic Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) 12q14.3-q15
Hs.322437 H19 2518 31 text pic H19, imprinted maternally expressed untranslated mRNA 11p15.5
Hs.195464 FLNA 1746 32 text pic filamin A, alpha (actin binding protein 280) Xq28
Hs.82208 ACADVL 966 33 text pic acyl-Coenzyme A dehydrogenase, very long chain 17p13-p11
Hs.287820 FN1 4367 33 text pic fibronectin 1 2q34
Hs.406125 HNRPC 2127 34 text pic heterogeneous nuclear ribonucleoprotein C (C1/C2) 14q11.1
Hs.75990 HP 499 35 text pic haptoglobin 16q22.1
Hs.184411 ALB 5879 35 text pic albumin 4q11-q13
Hs.252259 RPS3 6258 36 text pic ribosomal protein S3 11q13.3-q13.5
Hs.356360 RPS2 8722 36 text pic ribosomal protein S2 16p13.3
Hs.178551 RPL8 3512 38 text pic ribosomal protein L8 8q24.3
Hs.198281 PKM2 6434 41 text pic pyruvate kinase, muscle 15q22
Hs.14376 ACTG1 13722 43 text pic actin, gamma 1 17q25
Hs.256184 EEF1G 8337 44 text pic eukaryotic translation elongation factor 1 gamma 11q12.2
Hs.179661 5912 45 text pic Beta-tubulin [Homo sapiens], mRNA sequence
Hs.406565 IGKC 6434 54 text pic immunoglobulin kappa constant 2p12
Hs.169476 GAPD 15505 68 text pic glyceraldehyde-3-phosphate dehydrogenase 12p13
Hs.181165 EEF1A1 23417 83 text pic eukaryotic translation elongation factor 1 alpha 1 6q14.1
¡@
¡@