蛋白質資料庫

現有的蛋白質資料庫,除了收錄真正的 蛋白質序列外,也收錄轉譯的核酸序列,不過這不是六個讀架的轉譯,而且根據所註解的轉譯起點與終點所做的,因此未被報導的轉譯區就不會被納入蛋白質資料庫。

資料庫 負責機構 查尋工具 格式 備 註
SwissProt (Manual) SIB & EBI SRS & web search tools SwissProt

Best curated protein seq. db.

TrEMBL

SIB & EBI

SRS & web search tools   Translated EMBL seq.

GenPept & Entrez proteins

NCBI Entrez   Translated GenBank seq.
PIR

PIR 
& MIPS
&
JIPID

PIR-PSD
&
iProClass
 

Protein Identification Resource: I. annotated; II. preliminary sequence (equiv. to TrEMBL); III. Unverified sequences; IV. unencoded or untranslated.

NRL-3D      

Protein seq. of PDB records

OWL   web search tools  

OWL is a non-redundant composite of 4 publicly-available primary sources: SWISS-PROT, PIR (1-3), GenBank (translation) and NRL-3D. SWISS-PROT is the highest priority source, all others being compared against it to eliminate identical and trivially-different sequences.

- quoted from the homepage of owl

* 資料庫欄連接 使用者手冊 或 release note

資料庫簡介

Last updated on 12/24/01